Image and Data - Analysis, Research, Translation

Davide Danovi and Maddy Parsons

Monday 2 September at the Crick- Image and Data - analysis, research, translation Eventbrite link: <A HREF="https://www.eventbrite.co.uk/e/image-and-data-analysis-research-translation-tickets-65514195723" TARGET="_blank">image-and-data-analysis-research-translation</A>
<A HREF="https://www.eventbrite.co.uk/e/image-and-data-analysis-research-translation-tickets-65514195723" TARGET="_blank"></A>Please let us know if your circumstances have changed and you can't make it anymore. Also please let us know of your special requirements for food and accessibility.
Programme and all FAQs and informations below.
A <A HREF="https://www.dropbox.com/sh/i9rsuls8mtfwked/AAA4t7eTuiBxUmcNft5WhGyQa?dl=0" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">dropbox link</A> is now available for both presentations and interaction with technology providers. You are welcome to upload any image or data for which you would like to discuss analysis. Please contact <A HREF="mailto:callum.arthurs@kcl.ac.uk" TARGET="_blank" REL="nofollow noopener noreferrer">Callum Arthurs</A> if your folder exceeds 3GB or if you have problems uploading your presentation.
If you are presenting your work in one of the speaker slots, please upload your talk there or see us before the break before your session.
We ask you to be mindful of the time allocated (which should include Q&A for example 8 minutes talk + 2 minutes Q&A). Please focus on solutions and bottlenecks over marketing slides to engage the audience further during breaks and in the final networking session.
We have privileged a 'flashtalks' structure to maximise the opportunities of interactions and discussions and the chance of meeting relevant contacts that will help define your challenges and progress your work. Thank you for your understanding and for reducing the number of your slides to avoid rushing through your talk.
organised by the <A HREF="http://cms.the-stem-cell-hotel.webnode.com/home/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Stem Cell Hotel</A> with the <A HREF="https://nic.kcl.ac.uk/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Nikon Imaging Centre</A>, the <A HREF="https://www.crick.ac.uk/research/platforms-and-facilities/light-microscopy" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Advanced Light Microscopy</A> and the <A HREF="https://www.crick.ac.uk/research/platforms-and-facilities/high-throughput-screening" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">High Throughput Screening</A> facilities.
 
9.00am Registration
Introduction Davide Danovi - Chair Maddy Parsons 
10.00    <A HREF="https://www.eng.ox.ac.uk/people/heba-sailem/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Heba Sailem</A> Oxford - Development of an intelligent system for high content analysis 10.30    <A HREF="https://research-information.bristol.ac.uk/en/persons/rafael-e-carazo-salas(a7638b29-53e4-49ba-82b5-98b21d82f41f).html" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Rafael Carazo Salas</A> Bristol - Dissecting hPSC dynamics by multi-reporter HC microscopy 10.50    <A HREF="https://www.ebi.ac.uk/about/people/ugis-sarkans" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Ugis Sarkans</A> EBI -BioImage Archive at EMBL-EBI 11.00    <A HREF="https://www.rdm.ox.ac.uk/people/dominic-waithe" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Dominic Waithe</A> Oxford - Resources for large-dataset image analysis: Neubias and beyond 11.10    <A HREF="https://www.linkedin.com/in/emily-doyle-835093b/?originalSubdomain=uk" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Emily Doyle</A> Nikon - Automated Evaluation Methods for Stem Cell Production and Culture 11.20    <A HREF="https://www.acquifer.de/data-solutions/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Peter Zehetmayer</A> Acquifer - Big Image Data - Storage, Processing and Analysis with Local Private Cloud Computing
 
11.30    Biscuits
 
Chair Michael Howell 
12.00    <A HREF="https://www.ucl.ac.uk/lmcb/users/robin-ketteler" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Robin Ketteler</A> UCL - Phenotypic Screening of Autophagy Modulators 12.10    <A HREF="https://www.kcl.ac.uk/people/lorenzo-veschini" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Lorenzo Veschini</A> King’s - Multi-parametric high-content profiling of endothelial cells 12.20    <A HREF="http://www.stemcell.com" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Roxana Micsik</A> STEMCELL – Bottlenecks in 3D organoid cultures systems 12.30    <A HREF="https://www.crick.ac.uk/research/find-a-researcher/david-barry" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">David Barry</A> Crick - Cluster-based 3D high-content analysis 12.40    <A HREF="https://www.linkedin.com/in/marianthi-mara-tatari-300b215/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Mara Tatari</A> ICR – Heterocellular 3D models in high throughput screenings for drug discovery 12.50    <A HREF="https://medicinehealth.leeds.ac.uk/medicine/staff/905/dr-heiko-wurdak" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Heiko Wurdak</A> Leeds - Developing Self-assembling Brain Tumour Organoids as a Clinical Decision Support System
 
1pm     Lunch
 
Chair Kurt Anderson
2.00      <A HREF="https://www.cytosmart.com/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Joffry Maltha</A> Cytosmart – How to dramatically reduce cost and complexity of live cell imaging 2.10      <A HREF="http://www.wattlab.org/toru-hiratsuka.html" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Toru Hiratsuka</A> King’s – Cell signalling fluctuation and cell tracking 2.20      <A HREF="https://www.qmul.ac.uk/sbcs/staff/daviddang.html" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">David Dang</A> QMUL/King’s – SpinX, an automated mitotic spindle tracking software 2.30      <A HREF="https://www.phasefocus.com/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">James Russell</A> Phasefocus - Measuring live-cell phenotypic behaviour from 96 wells to single cells 2.40      <A HREF="https://www.corelifeanalytics.com/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">David Egan</A> CoreLifeAnalytics - Efficacy &amp; Mechanism of Action from High Content Data
 
2.50      Fruit
 
Chair Davide Danovi
3.10      <A HREF="https://cellari.io/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Erik Poulsen</A> Cellari - Making AI count (video) 3.20      <A HREF="https://www.crick.ac.uk/news/2019-04-09_science-date-an-experimentalist-meets-a-computational-biologist" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Anna Laddach</A> King’s/Crick –Integrating genetic variant and imaging data 3.30      <A HREF="https://www.kcl.ac.uk/nms/depts/mathematics/people/atoz/annibalea" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Alessia Annibale</A> King’s - A mathematical perspective on cellular (re)programming 3.40      <A HREF="https://phenomic.ai/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Sam Cooper</A> Phenomic AI – Targeting tumor stroma with imaging, deep-learning &amp; antibodies 3.50      <A HREF="https://nathanbenaich.github.io/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Nathan Benaich</A> Air Street Capital - AI and imaging in life science: an investor perspective
 
4.00pm networking, tables available to bring your bottlenecks and solutions to chat about:
infrastructure                             ACQUIFER                   PHENOMIC AI segmentation                            CELLARI                      PHASEFOCUS screening-profiling                     CORELIFEANALYTICS CYTOSMART stem cell evaluation                   NIKON                          workflows, protocols, pipelines   STEMCELLTECHNOLOGIES
 
5.00      wrap up about future plans and strategies
5.20      we get going to <A HREF="https://camino.uk.com/restaurant/kings-cross/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Camino’s</A> for drinks at 5.30pm
If you’d like to book a visit to the Stem Cell Hotel for Fri 6thSep or Fri 4thOct, please let us know on the day.
Join a mix of researchers from academia and biotech aiming at building pipelines to extract data from images towards translational applications. We are passionate about bridging gaps and engaging the different scientific communities involved. 
We'd like the day to be flexible and for all to make the most out of it. Feel free to bring your laptop along as there is a hot-desking area (with a few power sockets) to showcase your solutions or describe your current bottlenecks. if you require more information about the set up please contact <A HREF="mailto:callum.arthurs@kcl.ac.uk" TARGET="_blank" REL="nofollow noopener noreferrer">Callum Arthurs</A>.
After 5pm we will be walking together to <A HREF="https://camino.uk.com/restaurant/kings-cross/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Camino’s</A> (5 mins from the Crick across King's Cross Station) where more refreshments (and drinks) will be served. <A HREF="https://phenomic.ai/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Phenomic AI</A> has kindly arranged this. 
Please keep in mind the different backgrounds, we expect a mix of researchers from academia and biotech aiming at building pipelines to extract data from images towards translational applications. We are passionate about bridging gaps and engaging the different scientific communities involved and we hope you will benefit from some fresh insights and new perspectives on your work. 
Kick-start your September by getting the brightest exposure to Light Microscopy and discussing image analysis bottlenecks and solutions, infrastructure and workflows, data integration and artificial intelligence with a focus on translational research towards platforms for regenerative medicine and drug discovery.
We look forward to welcoming you at the Crick!

Francis Crick Institute

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Image and Data - Analysis, Research, Translation

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